daily tag quicklook update
wrc
2023-08-22
1 setup
Run this daily to get a snapshot of tag stats and health
2 notes
2.1 PATH TO LATEST DATA
# paths to update when you run
portaldir <- "portal_downloads"
datadirss <- list.files(portaldir)
datadir <- file.path(portaldir, datadirss[length(datadirss)])2.2 basic helper function
2.3 load paths adjust as needed
2.4 Import data from wildlife portal and the goniometer. Merge the two stacks.
## Warning in sattagutils::load_tag(dpaths[d], streams, stream_delim,
## retain_date_format = retain_date_format): 233108-Series.csv: i can't seem to
## find any data...3 tag summary
| ptt | hex | serial | tag_model | deployid | catalog_ID_DUML | BRS_season | deploydate_yyyymmdd | deploytime_hhmm | species | location | tagger | permit | tagtype | longitude | latitude | tagside | taglocation | taglocationnotes | programming_basic_descriptor | notes | recorder | age | sex | agesex_conf | headshot | agesex_reason | appearance_notes | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | 220740 | 2C2704C | NA | SPLASH10-333 | ZcTag136_DUML | NA | brs10 | 20230725 | 1321 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 5 | 220736 | 2C27000 | NA | SPLASH10-333 | ZcTag137_DUML | NA | brs10 | 20230725 | 1449 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | f | high | y | mother calf | NA |
| 6 | 220743 | 2C27079 | NA | SPLASH10-333 | ZcTag138_DUML | NA | brs10 | 20230725 | 1924 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 1 | 220745 | 2C27098 | NA | SPLASH10-333 | ZcTag139_DUML | NA | brs10 | 20230726 | 1638 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | u | u | y | NA | ||
| 2 | 233112 | 406B18B | NA | SPLASH10-333 | ZcTag140_DUML | NA | brs10 | 20230726 | 1958 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 3 | 233115 | 406B1BE | NA | SPLASH10-333 | ZcTag141_DUML | NA | brs10 | 20230726 | 2027 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 9 | 233118 | 406B1E1 | NA | SPLASH10-333 | ZcTag142_DUML | NA | brs10 | 20230807 | 1340 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 8 | 233110 | 406B16A | NA | SPLASH10-F-333 | ZcTag143_DUML | NA | brs10 | 20230807 | 1558 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 7 | 233111 | 406B179 | NA | SPLASH10-F-333 | ZcTag144_DUML | NA | brs10 | 20230807 | 1620 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 10 | 233108 | 406B14C | NA | SPLASH10-F-333 | ZcTag145_DUML | NA | brs10 | 20230821 | 1901 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 11 | 233107 | 406B135 | NA | SPLASH10-F-333 | ZcTag146_DUML | NA | brs10 | 20230821 | 1914 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
4 calculate stats
## Warning in min(x): no non-missing arguments to min; returning Inf## Warning in max(x): no non-missing arguments to max; returning -Inf5 summaries
5.1 status and corrupt
| deployid | ptt | nmsg | ncrc | transmits | battvoltrange | zerodepthrange | last_sta_recieved | ncorrupt | |
|---|---|---|---|---|---|---|---|---|---|
| 5 | 233107 | 233107 | 1 | 1 | NA | Inf to -Inf | 1 to 1 | 2023-08-21 23:02:10 | 2 |
| 6 | 233108 | 233108 | 2 | 0 | 0 | 10 | |||
| 2 | ZcTag136_DUML | 220740 | 74 | 74 | 10824 | 3.248 to 3.568 | -13 to 4 | 2023-08-21 22:18:09 | 198 |
| 1 | ZcTag137_DUML | 220736 | 22 | 21 | 9451 | 3.376 to 3.504 | 1 to 3 | 2023-08-21 11:49:36 | 238 |
| 3 | ZcTag138_DUML | 220743 | 10 | 6 | 871 | 3.568 to 3.568 | 2 to 3 | 2023-08-07 14:30:41 | 334 |
| 4 | ZcTag139_DUML | 220745 | 11 | 11 | 4143 | 3.504 to 3.568 | -37 to 1 | 2023-08-07 14:31:02 | 154 |
| 9 | ZcTag140_DUML | 233112 | 7 | 7 | 1188 | 3.44 to 3.504 | 1 to 3 | 2023-08-02 11:16:31 | 81 |
| 10 | ZcTag141_DUML | 233115 | 16 | 15 | 1702 | 3.504 to 3.504 | 1 to 3 | 2023-07-30 14:31:55 | 52 |
| 11 | ZcTag142_DUML | 233118 | 27 | 26 | 4418 | 3.44 to 3.504 | 3 to 6 | 2023-08-22 00:48:23 | 72 |
| 7 | ZcTag143_DUML | 233110 | 6 | 6 | 4880 | 3.44 to 3.504 | 2 to 3 | 2023-08-22 01:58:27 | 169 |
| 8 | ZcTag144_DUML | 233111 | 1 | 0 | 0 | 211 |
5.2 locations
| deployid | ptt | nloc | nz | na | nb | n0 | n1 | n2 | n3 | last_loc_recieved | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 5 | 233107 | 233107 | 10 | 0 | 0 | 4 | 6 | 0 | 0 | 0 | 2023-08-22 09:16:21 |
| 6 | 233108 | 233108 | 11 | 0 | 1 | 2 | 7 | 0 | 1 | 0 | 2023-08-22 03:37:02 |
| 2 | ZcTag136_DUML | 220740 | 469 | 1 | 37 | 105 | 216 | 79 | 24 | 7 | 2023-08-22 09:47:11 |
| 1 | ZcTag137_DUML | 220736 | 336 | 1 | 48 | 119 | 111 | 44 | 11 | 2 | 2023-08-22 09:47:33 |
| 3 | ZcTag138_DUML | 220743 | 213 | 0 | 37 | 114 | 29 | 24 | 6 | 3 | 2023-08-12 16:06:58 |
| 4 | ZcTag139_DUML | 220745 | 203 | 1 | 24 | 140 | 28 | 6 | 2 | 2 | 2023-08-22 00:22:32 |
| 9 | ZcTag140_DUML | 233112 | 71 | 1 | 13 | 31 | 19 | 4 | 3 | 0 | 2023-08-02 11:15:31 |
| 10 | ZcTag141_DUML | 233115 | 63 | 1 | 10 | 20 | 24 | 7 | 1 | 0 | 2023-07-30 17:41:17 |
| 11 | ZcTag142_DUML | 233118 | 190 | 0 | 26 | 36 | 86 | 36 | 6 | 0 | 2023-08-22 09:42:05 |
| 7 | ZcTag143_DUML | 233110 | 170 | 1 | 26 | 68 | 58 | 16 | 1 | 0 | 2023-08-22 09:15:23 |
| 8 | ZcTag144_DUML | 233111 | 153 | 0 | 23 | 92 | 33 | 4 | 1 | 0 | 2023-08-22 02:02:10 |
5.3 behavior
| deployid | ptt | n_beh_msgs | totalbeh_time_hours | nbehgaps | behgap_time_hours | latest_beh_recieved | |
|---|---|---|---|---|---|---|---|
| 5 | 233107 | 233107 | 0 | 0 | 0 | 0 | |
| 6 | 233108 | 233108 | 0 | 0 | 0 | 0 | |
| 2 | ZcTag136_DUML | 220740 | 0 | 0 | 0 | 0 | |
| 1 | ZcTag137_DUML | 220736 | 0 | 0 | 0 | 0 | |
| 3 | ZcTag138_DUML | 220743 | 0 | 0 | 0 | 0 | |
| 4 | ZcTag139_DUML | 220745 | 0 | 0 | 0 | 0 | |
| 9 | ZcTag140_DUML | 233112 | 0 | 0 | 0 | 0 | |
| 10 | ZcTag141_DUML | 233115 | 0 | 0 | 0 | 0 | |
| 11 | ZcTag142_DUML | 233118 | 0 | 0 | 0 | 0 | |
| 7 | ZcTag143_DUML | 233110 | 0 | 0 | 0 | 0 | |
| 8 | ZcTag144_DUML | 233111 | 0 | 0 | 0 | 0 |
5.4 series
this doesn’t count the messages quite right for some reason, but you get the idea. you can scroll down below and see the plot of messages receieved.
| deployid | ptt | n_ser_msgs | totalser_time_hours | nsergaps | sergap_time_hours | nsermsggaps | latest_ser_recieved | |
|---|---|---|---|---|---|---|---|---|
| 5 | 233107 | 233107 | 3 | 12 | 1 | 4 | 1 | 2023-08-22 08:00:00 |
| 6 | 233108 | 233108 | 1 | 0 | 0 | NA | NA | 2023-08-21 16:00:00 |
| 2 | ZcTag136_DUML | 220740 | 129 | 516 | 0 | 0 | 0 | 2023-08-16 |
| 1 | ZcTag137_DUML | 220736 | 115 | 460 | 9 | 56 | 14 | 2023-08-16 |
| 3 | ZcTag138_DUML | 220743 | 37 | 148 | 18 | 120 | 30 | 2023-08-05 20:00:00 |
| 4 | ZcTag139_DUML | 220745 | 49 | 192 | 19 | 328 | 82 | 2023-08-17 |
| 9 | ZcTag140_DUML | 233112 | 19 | 76 | 6 | 40 | 10 | 2023-07-31 16:00:00 |
| 10 | ZcTag141_DUML | 233115 | 16 | 64 | 3 | 28 | 7 | 2023-07-30 16:00:00 |
| 11 | ZcTag142_DUML | 233118 | 78 | 312 | 2 | 8 | 2 | 2023-08-20 20:00:00 |
| 7 | ZcTag143_DUML | 233110 | 44 | 176 | 12 | 140 | 35 | 2023-08-20 20:00:00 |
| 8 | ZcTag144_DUML | 233111 | 25 | 100 | 14 | 176 | 44 | 2023-08-19 08:00:00 |
5.5 fastloc
| deployid | ptt | fastloc_received | fastloc_locnum | fastloc_failures | fastloc_latest |
|---|---|---|---|---|---|
| ZcTag137_DUML | 220736 | 0 | 0 | 0 | 0 |
| ZcTag136_DUML | 220740 | 0 | 0 | 0 | 0 |
| ZcTag138_DUML | 220743 | 0 | 0 | 0 | 0 |
| ZcTag139_DUML | 220745 | 0 | 0 | 0 | 0 |
| 233107 | 233107 | 2 | 2 | 1 | 22-Aug-2023 04:26:30 |
| 233108 | 233108 | 2 | 1 | 1 | 21-Aug-2023 22:17:21 |
| ZcTag143_DUML | 233110 | 47 | 316 | 365 | 20-Aug-2023 21:26:32 |
| ZcTag144_DUML | 233111 | 15 | 38 | 139 | 21-Aug-2023 15:33:55 |
| ZcTag140_DUML | 233112 | 0 | 0 | 0 | 0 |
| ZcTag141_DUML | 233115 | 0 | 0 | 0 | 0 |
| ZcTag142_DUML | 233118 | 0 | 0 | 0 | 0 |
6 position snapshot
Plot of the last four positions for all the tags which have generated an argos position within the last 3 days
7 plot pressure sensors
PROVISIONAL plot status cutoffs and bat voltage. Cutoffs are in dotted red lines. These are either:
- healthy tags: the last status messages as a conservative cutoff and on tags that are still actively transmitting this is likely to increase
- unhealthy pressure transducer tags: if there are 2 status messages (crc’d) where the | zerodepth | > 10 then this is the last good status message before the 1st of those two bad messages.
We have settled on a more complicated cutoff system to capture a little more very likely good data. For detail please see DATAPREP_sattag_processing. But this gives you a general idea of approx. cutoffs and pressure transducer health.
8 control cee
8.1 +/- 12 hour look at ship based cee 23_01 on 20220804
gonio hits in purple
9 series message source plots
10 zoom in on megadives from 136 while offshore
note the time frames highlighted on the map are approximately the same just had a different number of uplinks and precision at those times.
